STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1532Solute binding protein of ABC transporter system for peptides. (435 aa)    
Predicted Functional Partners:
oppD1
oppD1 Oligopeptide transport ATP-binding protein oppD.
 
 0.993
oppB2-2
oppB2 Oligopeptide transport system permease protein oppB.
 
 0.993
oppD2-2
oppD2 Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
 
  
 0.788
BDP_1776
Transglutaminase domain-containing protein.
 
     0.588
oppB2
oppB2 Oligopeptide transport system permease protein oppB.
 
 
 0.582
BDP_0664
Permease protein of ABC transporter system for peptides.
 
 
 0.577
BDP_1773
Fibronectin type III domain-containing protein.
  
   
 0.573
BDP_0530
Conserved hypothetical membrane spanning protein.
  
  
 0.540
oppC1
oppC1 Oligopeptide transport system permease protein oppC.
 
 
 0.530
BDP_0665
Permease protein of ABC transporter system for peptides.
 
 
 0.520
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.