Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lysMLysM domain protein. (57 aa)    
Predicted Functional Partners:
BDP_0476
Narrowly conserved hypothetical secreted protein.
  
     0.772
BDP_1580
Conserved hypothetical protein.
  
     0.766
BDP_1937
Conserved hypothetical protein.
  
     0.761
BDP_2265
Conserved hypothetical protein.
  
     0.760
BDP_0759
Conserved hypothetical protein.
  
   
 0.738
cyaB
Adenylate cyclase.
  
     0.694
BDP_1783
Hypothetical protein.
 
     0.679
BDP_0887
Conserved hypothetical protein.
  
     0.671
BDP_0553
Narrowly conserved hypothetical membrane spanning protein.
  
     0.664
BDP_1778
Hypothetical protein.
 
   
 0.658
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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