BDP_1560 protein (Bifidobacterium dentium) - STRING interaction network

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Score

BDP_1560

16S RNA methylase. (207 aa)

Predicted Functional Partners:

hrpA

0.845

hflX

0.656

obg

0.595

ldh2

0.553

BDP_2237

0.524

valS

0.487

rpoB

0.468

rplA

0.446

nusA

0.439

rplL

0.433

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_1560	BDP_2237	BDP_1560	BDP_2237	16S RNA methylase.	Conserved hypothetical protein.	0.524
BDP_1560	hflX	BDP_1560	BDP_1559	16S RNA methylase.	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.656
BDP_1560	hrpA	BDP_1560	BDP_1561	16S RNA methylase.	ATP-dependent helicase hrpA.	0.845
BDP_1560	ldh2	BDP_1560	BDP_1558	16S RNA methylase.	Ldh2 L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.	0.553
BDP_1560	nusA	BDP_1560	BDP_0463	16S RNA methylase.	nusA N utilization substance protein A; Participates in both transcription termination and antitermination.	0.439
BDP_1560	obg	BDP_1560	BDP_0347	16S RNA methylase.	GTP-binding protein, GTP1/OBG family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.595
BDP_1560	rplA	BDP_1560	BDP_0354	16S RNA methylase.	rlpA LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.446
BDP_1560	rplL	BDP_1560	BDP_0395	16S RNA methylase.	rplL LSU ribosomal protein L12P (L7/L12); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.433
BDP_1560	rpoB	BDP_1560	BDP_1782	16S RNA methylase.	DNA-directed RNA polymerase subunit beta RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.468
BDP_1560	valS	BDP_1560	BDP_1976	16S RNA methylase.	valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.	0.487
BDP_2237	BDP_1560	BDP_2237	BDP_1560	Conserved hypothetical protein.	16S RNA methylase.	0.524
BDP_2237	valS	BDP_2237	BDP_1976	Conserved hypothetical protein.	valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.	0.664
hflX	BDP_1560	BDP_1559	BDP_1560	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	16S RNA methylase.	0.656
hflX	hrpA	BDP_1559	BDP_1561	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	ATP-dependent helicase hrpA.	0.692
hflX	ldh2	BDP_1559	BDP_1558	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	Ldh2 L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.	0.638
hflX	obg	BDP_1559	BDP_0347	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	GTP-binding protein, GTP1/OBG family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.486
hflX	rplA	BDP_1559	BDP_0354	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	rlpA LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.481
hrpA	BDP_1560	BDP_1561	BDP_1560	ATP-dependent helicase hrpA.	16S RNA methylase.	0.845
hrpA	hflX	BDP_1561	BDP_1559	ATP-dependent helicase hrpA.	hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.	0.692
hrpA	ldh2	BDP_1561	BDP_1558	ATP-dependent helicase hrpA.	Ldh2 L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.	0.571