STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1563Hypothetical protein. (269 aa)    
Predicted Functional Partners:
BDP_0889
HAD family hydrolase.
  
     0.524
BDP_1562
AraJ-like protein probably involved in transport of arabinose polymers.
     
 0.512
BDP_0530
Conserved hypothetical membrane spanning protein.
 
   
 0.480
BDP_1089
Hypothetical protein.
   
 
 0.455
BDP_1228
Permease protein of ABC transporter system.
   
 
 0.455
BDP_1570
Conserved hypothetical protein.
   
 
 0.455
BDP_1773
Fibronectin type III domain-containing protein.
 
   
 0.452
hflX
hflX GTP-binding protein hflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
     
 0.433
hrpA
ATP-dependent helicase hrpA.
  
    0.425
BDP_1560
16S RNA methylase.
       0.410
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.