STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1572Serine protease. (510 aa)    
Predicted Functional Partners:
BDP_1571
Conserved hypothetical protein.
  
 
 0.700
BDP_1565
DNA segregation ATPase and related proteins (FtsK/SpoIIIE family).
 
 
 0.671
glnD-2
glnD [protein-PII] uridylyltransferase; Belongs to the WXG100 family.
 
  
 0.660
BDP_1773
Fibronectin type III domain-containing protein.
 
 
 0.656
BDP_1577
Serine protease.
 
 
0.606
BDP_1776
Transglutaminase domain-containing protein.
 
    0.600
BDP_0881
DNA segregation ATPase-like protein.
 
 
 0.586
BDP_1576
CD9/CD37/CD63 antigen.
 
  
 0.581
BDP_0045
Dipeptidyl peptidase IV.
  
  
 0.579
BDP_0414
Narrowly conserved hypothetical protein.
 
     0.578
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.