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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1589Chromosome segregation ATPase. (359 aa)    
Predicted Functional Partners:
lspA
LspA Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
    0.861
BDP_1587
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.860
BDP_1331
Narrowly conserved hypothetical protein.
 
     0.779
BDP_1580
Conserved hypothetical protein.
 
     0.775
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.774
BDP_1208
Hypothetical secreted protein.
  
     0.774
BDP_2268
Conserved hypothetical secreted protein.
  
     0.773
BDP_1332
Narrowly conserved hypothetical membrane spanning protein.
  
     0.771
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
  
   
 0.771
BDP_0233
Conserved hypothetical protein.
  
     0.770
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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