STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1601Transcriptional regulator, LacI family. (347 aa)    
Predicted Functional Partners:
BDP_0623
Transcriptional regulator, LacI family.
  
     0.774
BDP_0953
Transcriptional regulator.
  
     0.772
BDP_2206
Transcriptional regulator, LacI family.
  
     0.772
cebR
cebR Cellobiose transport system transcriptional regulator - LacI family regulator.
  
     0.770
BDP_2166
Transcriptional regulator, LacI family.
  
     0.766
BDP_0654
Transcriptional regulator, LacI family.
  
     0.757
BDP_2162
Transcriptional regulator, LacI family.
  
     0.731
BDP_1600
Conserved hypothetical protein with DUF77 domain.
       0.724
fosB
FosB Sucrose permease.
     
 0.669
fosC
FosC Beta-fructofuranosidase; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.656
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.