Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1610Solute binding protein of ABC transporter system. (358 aa)    
Predicted Functional Partners:
BDP_1609
Permease protein of ABC transporter system.
 
 0.975
BDP_2244
ATP-binding protein of ABC transporter system.
  
 
 0.821
BDP_2245
Permease protein of ABC transporter system.
 
 
 0.775
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
  
 
 0.677
iunH1
IunH1 Inosine-uridine preferring nucleoside hydrolase.
       0.661
glnB
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
   
 
 0.647
BDP_1078
Glutamate synthase [NADPH] large subunit.
   
  
 0.456
BDP_0077
Hypothetical protein.
  
  
 0.402
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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