Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1618Pyridoxine biosynthesis enzyme. (437 aa)    
Predicted Functional Partners:
BDP_1615
Hydrolases of the alpha/beta superfamily.
 
     0.774
BDP_1937
Conserved hypothetical protein.
  
     0.771
BDP_0771
Conserved hypothetical protein.
  
     0.769
BDP_1625
Aminoglycoside phosphotransferase.
 
     0.769
BDP_0398
DNA and RNA helicase related protein.
  
     0.768
BDP_0886
Conserved hypothetical protein.
  
     0.764
BDP_1938
Conserved hypothetical protein.
  
     0.759
BDP_2265
Conserved hypothetical protein.
  
     0.758
BDP_0887
Conserved hypothetical protein.
  
     0.754
BDP_1783
Hypothetical protein.
  
     0.745
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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