Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_1625Aminoglycoside phosphotransferase. (509 aa)    
Predicted Functional Partners:
BDP_1626
ATP-binding protein.
 
     0.790
BDP_0398
DNA and RNA helicase related protein.
  
     0.773
crgA
Conserved hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.772
BDP_1618
Pyridoxine biosynthesis enzyme.
 
     0.769
BDP_0761
Esterase/lipase.
  
     0.768
BDP_0886
Conserved hypothetical protein.
  
     0.767
BDP_0887
Conserved hypothetical protein.
  
     0.760
BDP_0203
Conserved hypothetical protein.
  
     0.759
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
     0.753
BDP_0248
Pre-pilin peptidase or phosphoesterase.
 
 
 
 0.752
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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