Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1626ATP-binding protein. (74 aa)    
Predicted Functional Partners:
BDP_1625
Aminoglycoside phosphotransferase.
 
     0.790
BDP_0545
Conserved hypothetical membrane spanning protein.
  
     0.639
pcrA-2
ATP-dependent DNA helicase PcrA.
       0.611
BDP_0501
Narrowly conserved hypothetical membrane spanning protein.
  
     0.587
BDP_0007
Hypothetical membrane spanning protein.
  
     0.545
pepP
pepP Xaa-Pro aminopeptidase.
  
     0.543
BDP_0203
Conserved hypothetical protein.
  
     0.525
BDP_2237
Conserved hypothetical protein.
  
     0.489
BDP_0355
Conserved hypothetical protein.
  
     0.404
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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