STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1628Vitamin K epoxide reductase. (209 aa)    
Predicted Functional Partners:
BDP_2261
Protein-disulfide isomerase.
 
  
 0.825
BDP_0871
Conserved hypothetical protein.
  
     0.643
BDP_1304
Conserved hypothetical membrane spanning protein.
  
     0.624
BDP_1627
PHP domain containing protein (TRPH).
       0.607
BDP_0887
Conserved hypothetical protein.
  
     0.602
BDP_0248
Pre-pilin peptidase or phosphoesterase.
  
     0.586
BDP_1580
Conserved hypothetical protein.
  
     0.573
BDP_1937
Conserved hypothetical protein.
  
     0.563
BDP_1283
Conserved hypothetical protein.
  
     0.525
xseB
xseB Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.515
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.