cds1 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

cds1

CRISPR-associated RAMP Csd1 family protein. (629 aa)

Predicted Functional Partners:

cas5

0.989

cas3

0.926

cas1-2

0.793

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cas1-2	cas3	BDP_1640	BDP_1643	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	CRISPR-associated helicase Cas3.	0.829
cas1-2	cas5	BDP_1640	BDP_1642	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	CRISPR-associated Cas5 family protein.	0.801
cas1-2	cds1	BDP_1640	BDP_1641	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	CRISPR-associated RAMP Csd1 family protein.	0.793
cas3	cas1-2	BDP_1643	BDP_1640	CRISPR-associated helicase Cas3.	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.829
cas3	cas5	BDP_1643	BDP_1642	CRISPR-associated helicase Cas3.	CRISPR-associated Cas5 family protein.	0.952
cas3	cds1	BDP_1643	BDP_1641	CRISPR-associated helicase Cas3.	CRISPR-associated RAMP Csd1 family protein.	0.926
cas5	cas1-2	BDP_1642	BDP_1640	CRISPR-associated Cas5 family protein.	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.801
cas5	cas3	BDP_1642	BDP_1643	CRISPR-associated Cas5 family protein.	CRISPR-associated helicase Cas3.	0.952
cas5	cds1	BDP_1642	BDP_1641	CRISPR-associated Cas5 family protein.	CRISPR-associated RAMP Csd1 family protein.	0.989
cds1	cas1-2	BDP_1641	BDP_1640	CRISPR-associated RAMP Csd1 family protein.	CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.	0.793
cds1	cas3	BDP_1641	BDP_1643	CRISPR-associated RAMP Csd1 family protein.	CRISPR-associated helicase Cas3.	0.926
cds1	cas5	BDP_1641	BDP_1642	CRISPR-associated RAMP Csd1 family protein.	CRISPR-associated Cas5 family protein.	0.989