Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BDP_1669Transcriptional regulator, TetR family. (234 aa)    
Predicted Functional Partners:
scrT-3
scrT Sucrose transporter.
 
     0.712
BDP_0587
Gp26.
  
     0.590
scrT
Sucrose transporter.
  
     0.512
BDP_0162
MFS-type transporter.
  
     0.503
scrT-2
scrT Sucrose transporter.
  
     0.484
BDP_0116
Na+/sugar transporter.
  
     0.481
scrT-4
scrT Sucrose transporter.
  
     0.480
BDP_1739
5 nucleotidase deoxy cytosolic type C.
  
     0.459
BDP_2165
Binding-protein-dependent transport systems inner membrane component.
  
     0.425
BDP_0209
Sugar transporter.
  
     0.423
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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