STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fabG-5fabG 3-oxoacyl-[acyl-carrier protein] reductase. (257 aa)    
Predicted Functional Partners:
BDP_0012
Sugar kinase.
 
 
 0.880
BDP_0013
Sugar decarboxylase or lyase/synthase.
  
  
  0.845
rpe1
Rpe1 Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.835
gnt-2
Gnt 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 0.832
rpi
Rpi Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.806
gnt
Gnt 6-phosphogluconate dehydrogenase.
     
 0.801
BDP_0010
Hypothetical membrane spanning protein, H+/gluconate symporter.
  
  
 0.553
BDP_1686
Transcriptional regulator, LacI family.
   
   0.494
BDP_1688
Gluconate transport protein.
  
  
 0.472
BDP_0011
Sugar isomerase/epimerase.
 
   
 0.460
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.