STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1691Activator of (R)-2-hydroxyglutaryl-CoA dehydratase. (1095 aa)    
Predicted Functional Partners:
BDP_1692
Activator of (R)-2-hydroxyglutaryl-CoA dehydratase.
   
 0.997
nrdG
nrdG Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.645
BDP_1287
Transporter.
 
    0.598
BDP_0291
Putative transporter.
 
    0.586
nrdD
nrdD Anaerobic ribonucleoside-triphosphate reductase.
  
    0.540
BDP_0756
2-keto-3-deoxy-6-phosphogluconate aldolase.
 
     0.498
BDP_0181
Hypothetical membrane-spanning protein.
 
    0.409
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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