Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dnaQ-3DnaQ DNA polymerase III alpha subunit. (439 aa)    
Predicted Functional Partners:
BDP_0199
GLXTG motif protein.
  
     0.616
BDP_0794
DEAD/DEAH box-like helicase.
  
     0.616
BDP_0317
ATP-binding protein of ABC transporter system.
 
 
   0.573
BDP_0782
Conserved hypothetical protein.
  
     0.559
BDP_0086
Conserved hypothetical protein.
  
     0.529
BDP_0063
Conserved hypothetical protein.
  
     0.516
BDP_1004
Hypothetical protein.
  
     0.484
BDP_0023
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
  
    0.483
BDP_1991
Conserved hypothetical protein.
  
     0.482
dnaE
DnaE DNA polymerase III alpha subunit.
   
 
 0.481
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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