Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1765Conserved hypothetical protein. (235 aa)    
Predicted Functional Partners:
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
  
 0.871
BDP_1764
MFS superfamily transporter.
 
     0.844
BDP_1767
ATP-dependent DNA helicase, UvrD/REP family; Belongs to the helicase family. UvrD subfamily.
 
  
 0.829
BDP_1766
Hypothetical protein.
       0.746
dapB
DapB dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
     
 0.619
BDP_1331
Narrowly conserved hypothetical protein.
  
     0.617
BDP_2268
Conserved hypothetical secreted protein.
  
     0.590
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.579
BDP_1208
Hypothetical secreted protein.
  
     0.500
BDP_0553
Narrowly conserved hypothetical membrane spanning protein.
  
     0.466
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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