STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1767ATP-dependent DNA helicase, UvrD/REP family; Belongs to the helicase family. UvrD subfamily. (1346 aa)    
Predicted Functional Partners:
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
   
 0.960
pcrA
ATP-dependent DNA helicase.
  
  
0.930
pcrA-2
ATP-dependent DNA helicase PcrA.
  
  
 
0.928
BDP_1765
Conserved hypothetical protein.
 
  
 0.829
BDP_1764
MFS superfamily transporter.
 
     0.811
BDP_1331
Narrowly conserved hypothetical protein.
 
 
   0.774
BDP_2268
Conserved hypothetical secreted protein.
  
     0.707
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.683
BDP_1589
Chromosome segregation ATPase.
  
   
 0.677
BDP_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.676
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.