STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1796Transcriptional regulator, DeoR family. (267 aa)    
Predicted Functional Partners:
galT
GalT galactose-1-phosphate uridylyltransferase.
 
     0.884
galK
GalK galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.838
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
 
  
 0.755
ptsG
ptsG PTS system, glucose-specific IIABC component.
 
  
 0.740
fabG-3
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
  
  
 0.494
fabG-4
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
  
  
 0.494
fabG-5
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
  
  
 0.494
sdr
Short chain dehydrogenase.
  
  
 0.494
BDP_0254
PTS system, enzyme I; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
  
 0.489
BDP_1797
Glycosyltransferase.
  
    0.432
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.