Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_1807Conserved hypothetical protein containing DUF2183 domain. (411 aa)    
Predicted Functional Partners:
gcvH
GcvH glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.668
ptrB
Protease II.
       0.607
BDP_1810
Phosphohydrolase (MutT/nudix family protein).
       0.564
BDP_1809
Conserved hypothetical protein with YkuD domain.
       0.541
BDP_0545
Conserved hypothetical membrane spanning protein.
  
     0.530
lplA
LplA lipoate-protein ligase A.
 
     0.522
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 2 subfamily.
       0.521
BDP_1811
Hydrolase, alpha/beta fold family.
       0.509
BDP_1625
Aminoglycoside phosphotransferase.
  
     0.501
BDP_1813
Conserved hypothetical protein.
       0.500
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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