STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1809Conserved hypothetical protein with YkuD domain. (523 aa)    
Predicted Functional Partners:
gcvH
GcvH glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.757
BDP_1810
Phosphohydrolase (MutT/nudix family protein).
       0.630
BDP_1589
Chromosome segregation ATPase.
  
    0.547
BDP_1807
Conserved hypothetical protein containing DUF2183 domain.
       0.541
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.492
BDP_1801
Penicillin-binding protein.
  
  
 0.478
BDP_1811
Hydrolase, alpha/beta fold family.
       0.476
BDP_0995
Conserved hypothetical protein.
  
     0.475
BDP_1331
Narrowly conserved hypothetical protein.
 
     0.475
BDP_2061
1,4-beta-N-acetylmuramidase.
 
   
 0.469
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.