Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
trxAThioredoxin; Belongs to the thioredoxin family. (120 aa)    
Predicted Functional Partners:
trxB2
trxB2 Thioredoxin reductase.
 
 
 0.870
groEL
groEL 60 kDa chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
 
 
 0.776
BDP_1813
Conserved hypothetical protein.
       0.673
BDP_1811
Hydrolase, alpha/beta fold family.
     
 0.659
BDP_1569
Conserved hypothetical protein.
    
   0.617
BDP_1814
Conserved hypothetical secreted protein with G5 domain.
       0.613
BDP_1816
Low molecular weight protein-tyrosine-phosphatase.
  
 
 0.588
BDP_1078
Glutamate synthase [NADPH] large subunit.
   
 
 0.572
BDP_1810
Phosphohydrolase (MutT/nudix family protein).
       0.557
gap
Gap Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
 
 0.551
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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