STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1813Conserved hypothetical protein. (204 aa)    
Predicted Functional Partners:
BDP_1811
Hydrolase, alpha/beta fold family.
  
    0.820
trxA
Thioredoxin; Belongs to the thioredoxin family.
     
 0.713
BDP_1810
Phosphohydrolase (MutT/nudix family protein).
     
 0.686
BDP_1814
Conserved hypothetical secreted protein with G5 domain.
 
     0.658
BDP_0545
Conserved hypothetical membrane spanning protein.
  
     0.626
gcvH
GcvH glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.586
BDP_0213
Type II secretion system protein, pilus assembly.
  
     0.564
BDP_1618
Pyridoxine biosynthesis enzyme.
 
     0.542
BDP_1807
Conserved hypothetical protein containing DUF2183 domain.
       0.541
ptrB
Protease II.
       0.502
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.