STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1814Conserved hypothetical secreted protein with G5 domain. (336 aa)    
Predicted Functional Partners:
ksgA
KsgA Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.838
BDP_0379
Narrowly conserved hypothetical protein.
 
   
 0.758
pyrE-2
Orotate phosphoribosyltransferase PyrE.
  
     0.753
BDP_0524
Hypothetical NLP/P60 protein.
 
  
 0.714
BDP_1401
Putative DNA binding protein.
  
     0.687
BDP_0759
Conserved hypothetical protein.
  
     0.679
BDP_1813
Conserved hypothetical protein.
 
     0.658
trxA
Thioredoxin; Belongs to the thioredoxin family.
       0.652
BDP_1216
DNA polymerase III, delta subunit.
 
     0.593
BDP_2089
DNase, TatD family.
 
   
 0.589
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.