Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
epsFEpsF glycosyl transferase (group 1). (384 aa)    
Predicted Functional Partners:
BDP_1846
Glycosyl transferase group 1.
  
     0.767
BDP_2032
Glycosyl transferase group 1.
  
     0.691
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.512
rfbP
RfbP Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.510
cspD-2
Undecaprenyl-phosphate sugar phosphotransferase CspD.
 
  
 0.507
BDP_1818
Hypothetical protein.
       0.498
BDP_1854
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
  
 0.472
cspD
Undecaprenyl-phosphate galactose phosphotransferase CspD.
  
  
 0.452
wzx-3
Flippase Wzx.
 
  
 0.443
BDP_1817
Conserved hypothetical protein.
  
  
 0.424
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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