Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
wzxWzx flippase. (489 aa)    
Predicted Functional Partners:
BDP_1821
Glycosyl transferase family 2.
  
  
 0.749
cspD
Undecaprenyl-phosphate galactose phosphotransferase CspD.
 
  
 0.748
wzy
Wzy putative exopolysaccharide polymerization protein.
  
  
 0.734
BDP_2035
Polysaccharide polymerase.
 
  
 0.721
BDP_0246
UDP-glactopyranose mutase.
 
  
 0.702
epsI
Glycosyltransferase EpsI.
  
  
 0.606
BDP_2033
Nucleotide sugar dehydrogenase.
  
  
 0.605
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.604
BDP_1854
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
  
 0.537
BDP_1859
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
  
 0.536
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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