STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1854Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase. (469 aa)    
Predicted Functional Partners:
cspD
Undecaprenyl-phosphate galactose phosphotransferase CspD.
 
  
 0.999
BDP_1859
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
 
0.924
cspD-2
Undecaprenyl-phosphate sugar phosphotransferase CspD.
 
  
 0.911
rfbP
RfbP Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.884
BDP_1852
Glycosyl transferases group 1,glycosyl transferase group 1.
 
  
 0.764
wefN
Glycosyl transferase group 1 WefN.
 
  
 0.762
BDP_1853
Acetyltransferase.
  
  
 0.723
BDP_1846
Glycosyl transferase group 1.
 
  
 0.713
BDP_1847
Capsular polysaccharide biosynthsis protein.
 
  
 0.706
BDP_0038
Serine-threonine protein kinase.
   
 
 0.703
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.