STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1878Solute binding protein of ABC transporter system, YodA-like protein. (559 aa)    
Predicted Functional Partners:
BDP_0896
ABC transporter permease.
 
  
 0.999
BDP_0897
ATP binding protein of ABC transporter.
 
  
 0.999
BDP_1884
Hypothetical protein.
  
  
 0.965
rpsN-2
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.766
purL
purL Phosphoribosylformylglycinamidine synthase.
     
 0.738
rpsN
rpsN 30S ribosomal protein S14-1; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.662
rpmB-2
50S ribosomal protein L28,50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.662
rpmE2
rpmE2 LSU ribosomal protein L31P; Binds the 23S rRNA.
  
  
 0.641
BDP_1880
Hypothetical protein.
       0.608
rpmJ1
Hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.532
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.