rpmJ1 protein (Bifidobacterium dentium) - STRING interaction network

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Score

rpmJ1

Hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family. (40 aa)

Predicted Functional Partners:

rpsN-2

0.967

rpmB-2

0.954

rpmG-2

0.948

rpsR

0.931

rplJ

0.923

rpsJ

0.923

rplD

0.923

rpsS

0.923

rpsC

0.923

rplP

0.923

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplJ	BDP_0431	BDP_0394	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.991
rplD	rplP	BDP_0431	BDP_0438	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rplP 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplD	rpmB-2	BDP_0431	BDP_1883	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L28,50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.910
rplD	rpmG-2	BDP_0431	BDP_1882	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.919
rplD	rpmJ1	BDP_0431	BDP_1879	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family.	0.923
rplD	rpsC	BDP_0431	BDP_0437	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsC 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsJ	BDP_0431	BDP_0429	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsJ 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplD	rpsN-2	BDP_0431	BDP_1881	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.941
rplD	rpsR	BDP_0431	BDP_2020	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.993
rplD	rpsS	BDP_0431	BDP_0434	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsS 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
rplJ	rplD	BDP_0394	BDP_0431	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.991
rplJ	rplP	BDP_0394	BDP_0438	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	rplP 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.992
rplJ	rpmB-2	BDP_0394	BDP_1883	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L28,50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.901
rplJ	rpmG-2	BDP_0394	BDP_1882	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.922
rplJ	rpmJ1	BDP_0394	BDP_1879	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL36 family.	0.923
rplJ	rpsC	BDP_0394	BDP_0437	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	rpsC 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.990
rplJ	rpsJ	BDP_0394	BDP_0429	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	rpsJ 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.989
rplJ	rpsN-2	BDP_0394	BDP_1881	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.923
rplJ	rpsR	BDP_0394	BDP_2020	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.989
rplJ	rpsS	BDP_0394	BDP_0434	rplJ LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	rpsS 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.989