Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1919Transcriptional regulator, LacI family. (336 aa)    
Predicted Functional Partners:
BDP_2131
Transcriptional regulator, LacI family.
  
     0.645
lacZ5
lacZ5 Beta-galactosidase.
     
 0.621
BDP_1908
Beta-galactosidase.
     
 0.621
lacZ5-3
LacZ5 Beta-galactosidase.
     
 0.621
iunH
Inosine-uridine preferring nucleoside hydrolase.
       0.542
BDP_1078
Glutamate synthase [NADPH] large subunit.
    
 
 0.519
BDP_1918
Multidrug resistance protein B (MFS family transporter).
       0.410
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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