Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
BDP_1926Transcriptional regulator, LacI family. (372 aa)    
Predicted Functional Partners:
BDP_2166
Transcriptional regulator, LacI family.
  
     0.771
BDP_0009
LacI-type transcriptional regulator.
  
     0.769
BDP_1686
Transcriptional regulator, LacI family.
  
     0.763
BDP_2162
Transcriptional regulator, LacI family.
  
     0.743
BDP_1648
Transcriptional regulator, LacI family.
  
     0.695
BDP_2131
Transcriptional regulator, LacI family.
  
     0.679
BDP_1927
Maf-like protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
    0.651
xylB
Xylulokinase.
   
 
 0.639
araD
L-ribulose-5-phosphate 4-epimerase.
 
   
 0.618
thrB
Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.
     
 0.594
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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