BDP_1946 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BDP_1946

ATP-binding protein of ABC transporter system. (210 aa)

Predicted Functional Partners:

BDP_1947

0.770

BDP_1948

0.770

BDP_4002

0.728

BDP_0841

0.570

BDP_4003

0.547

BDP_1945

0.494

BDP_1334

0.468

atpC

0.438

atpD

0.426

BDP_1439

0.423

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0841	BDP_1334	BDP_0841	BDP_1334	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.767
BDP_0841	BDP_1946	BDP_0841	BDP_1946	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.570
BDP_1334	BDP_0841	BDP_1334	BDP_0841	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.767
BDP_1334	BDP_1946	BDP_1334	BDP_1946	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.468
BDP_1439	BDP_1946	BDP_1439	BDP_1946	ABC-type multidrug transport system permease.	ATP-binding protein of ABC transporter system.	0.423
BDP_1945	BDP_1946	BDP_1945	BDP_1946	Hypothetical protein.	ATP-binding protein of ABC transporter system.	0.494
BDP_1945	BDP_1947	BDP_1945	BDP_1947	Hypothetical protein.	Hypothetical protein.	0.460
BDP_1945	BDP_1948	BDP_1945	BDP_1948	Hypothetical protein.	Hypothetical protein.	0.460
BDP_1946	BDP_0841	BDP_1946	BDP_0841	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.570
BDP_1946	BDP_1334	BDP_1946	BDP_1334	ATP-binding protein of ABC transporter system.	ATP-binding protein of ABC transporter system.	0.468
BDP_1946	BDP_1439	BDP_1946	BDP_1439	ATP-binding protein of ABC transporter system.	ABC-type multidrug transport system permease.	0.423
BDP_1946	BDP_1945	BDP_1946	BDP_1945	ATP-binding protein of ABC transporter system.	Hypothetical protein.	0.494
BDP_1946	BDP_1947	BDP_1946	BDP_1947	ATP-binding protein of ABC transporter system.	Hypothetical protein.	0.770
BDP_1946	BDP_1948	BDP_1946	BDP_1948	ATP-binding protein of ABC transporter system.	Hypothetical protein.	0.770
BDP_1946	BDP_4002	BDP_1946	BDP_4002	ATP-binding protein of ABC transporter system.	Hypothetical protein.	0.728
BDP_1946	BDP_4003	BDP_1946	BDP_4003	ATP-binding protein of ABC transporter system.	Hypothetical protein.	0.547
BDP_1946	atpC	BDP_1946	BDP_1952	ATP-binding protein of ABC transporter system.	ATP synthase epsilon chain.	0.438
BDP_1946	atpD	BDP_1946	BDP_1953	ATP-binding protein of ABC transporter system.	ATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.	0.426
BDP_1947	BDP_1945	BDP_1947	BDP_1945	Hypothetical protein.	Hypothetical protein.	0.460
BDP_1947	BDP_1946	BDP_1947	BDP_1946	Hypothetical protein.	ATP-binding protein of ABC transporter system.	0.770