STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2035Polysaccharide polymerase. (396 aa)    
Predicted Functional Partners:
BDP_2036
Putative glycosyltransferase.
  
  
 0.795
BDP_2034
Glycosyl transferase family 2.
  
    0.788
wzx
Wzx flippase.
 
  
 0.726
spaA
Surface protective antigen SpaA.
  
   
 0.726
BDP_2045
Glucosyltransferase-S.
  
   
 0.707
BDP_2056
Surface protein C.
  
   
 0.698
BDP_2033
Nucleotide sugar dehydrogenase.
  
  
 0.683
BDP_1477
Phage lysin-like lysozyme M1.
  
    0.625
BDP_0246
UDP-glactopyranose mutase.
 
  
 0.565
BDP_1071
Alpha/beta hydrolase.
   
 
 0.534
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.