STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbPRfbP Undecaprenyl-phosphate galactosephosphotransferase. (541 aa)    
Predicted Functional Partners:
BDP_1854
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
  
 0.884
BDP_1859
Chain length regulator (capsular polysaccharide biosynthesis) / Tyrosine-protein kinase.
 
  
 0.881
BDP_2037
Conserved hypothetical protein.
 
  
 0.761
BDP_2040
Glycosyltransferase.
 
  
 0.687
wzx-3
Flippase Wzx.
 
  
 0.521
epsF
EpsF glycosyl transferase (group 1).
 
  
 0.507
wzx
Wzx flippase.
 
  
 0.496
BDP_2039
Hypothetical protein.
       0.487
wzy
Wzy putative exopolysaccharide polymerization protein.
  
  
 0.485
BDP_0333
Putative guanylyltransferase.
 
  
 0.471
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.