STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbFdTDP-rhamnosyl transferase RfbF. (327 aa)    
Predicted Functional Partners:
rfbF-2
dTDP-rhamnosyl transferase RfbF.
 
   
 0.957
BDP_2040
Glycosyltransferase.
  
 0.956
BDP_0246
UDP-glactopyranose mutase.
 
  
 0.855
BDP_2048
Permease protein of ABC transporter system for polysaccharides.
  
  
 0.782
cspD
Undecaprenyl-phosphate galactose phosphotransferase CspD.
  
  
 0.648
BDP_2047
ATP-binding protein ABC transporter system for polysaccharides.
  
  
 0.562
rfbF-3
dTDP-rhamnosyl transferase RfbF.
 
   
 0.556
rfe
Rfe Undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase.
  
  
 0.452
BDP_1337
Conserved hypothetical membrane spanning protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
       0.412
BDP_1338
ATP-binding protein of ABC transporter system.
       0.400
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.