STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2047ATP-binding protein ABC transporter system for polysaccharides. (429 aa)    
Predicted Functional Partners:
BDP_2048
Permease protein of ABC transporter system for polysaccharides.
 
 
 0.999
rfbF-3
dTDP-rhamnosyl transferase RfbF.
 
  
 0.750
rmlB-2
RmlB dTDP-glucose 4,6-dehydratase.
  
  
 0.671
BDP_2046
Conserved hypothetical protein.
       0.669
BDP_0890
Conserved hypothetical protein.
   
    0.666
rfbF
dTDP-rhamnosyl transferase RfbF.
  
  
 0.562
rfbF-2
dTDP-rhamnosyl transferase RfbF.
 
  
 0.528
BDP_2040
Glycosyltransferase.
  
  
 0.499
BDP_2030
Glycosyl transferase family 2.
 
  
 0.489
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.465
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.