STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2048Permease protein of ABC transporter system for polysaccharides. (278 aa)    
Predicted Functional Partners:
BDP_2047
ATP-binding protein ABC transporter system for polysaccharides.
 
 
 0.999
rfbF
dTDP-rhamnosyl transferase RfbF.
  
  
 0.782
rfbF-3
dTDP-rhamnosyl transferase RfbF.
 
  
 0.759
rmlB-2
RmlB dTDP-glucose 4,6-dehydratase.
  
  
 0.671
BDP_2046
Conserved hypothetical protein.
       0.669
BDP_0246
UDP-glactopyranose mutase.
  
  
 0.606
BDP_2040
Glycosyltransferase.
  
  
 0.569
rfbF-2
dTDP-rhamnosyl transferase RfbF.
  
  
 0.548
BDP_0038
Serine-threonine protein kinase.
  
    0.460
pknA2
pknA2 Serine/threonine protein kinase.
  
    0.456
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.