STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spaASurface protective antigen SpaA. (478 aa)    
Predicted Functional Partners:
BDP_2035
Polysaccharide polymerase.
  
   
 0.726
BDP_2060
Internalin protein.
       0.578
BDP_2055
Fucose 4-O-acetylase related acetyltransferase.
 
     0.506
BDP_2058
Glycosyltransferase.
     
 0.494
BDP_2056
Surface protein C.
 
   
0.486
BDP_2032
Glycosyl transferase group 1.
  
   
 0.482
BDP_2057
Conserved hypothetical protein.
 
     0.457
BDP_1838
Glycosyltransferase, family 14.
  
   
 0.444
BDP_0595
Phage tape measure protein.
 
     0.434
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.