Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsA1-2Ribose transport ATP-binding protein RbsA. (463 aa)    
Predicted Functional Partners:
rbsC1-2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.952
rbsA1
rbsA1 Ribose transport ATP-binding protein rbsA.
  
  
 
0.902
BDP_2070
Hypothetical secreted protein.
  
 0.871
BDP_0570
ABC transporter (substrate-binding protein).
  
 0.801
rbsC1
rbsC1 Ribose transport system permease protein rbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.801
BDP_0173
ABC-type sugar transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.748
rbsC1-3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.748
BDP_0175
Sugar mutarotase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.607
rbsB1
D-ribose-binding protein RbsB.
 
 
 0.598
BDP_0174
ABC-type sugar transporter, sugar-binding component.
  
 
 0.523
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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