Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_2085Glutamine amidotransferase, class-II. (306 aa)    
Predicted Functional Partners:
BDP_0144
Fimbrial subunit.
  
     0.723
BDP_0234
Phosphohydrolase, calcineurin-like phosphoesterase.
 
   
 0.721
BDP_2084
Phosphohydrolase.
 
     0.720
BDP_1331
Narrowly conserved hypothetical protein.
  
     0.712
BDP_0260
MFS-family transporter.
  
     0.702
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
     0.702
kup
Kup system potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
       0.674
BDP_1170
Conserved hypothetical protein.
  
     0.655
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.617
BDP_2089
DNase, TatD family.
 
    0.617
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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