STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2104Conserved hypothetical protein. (721 aa)    
Predicted Functional Partners:
BDP_2105
Drug resistance transporter, EmrB/QacA subfamily.
       0.784
BDP_0658
alpha-L-arabinofuranosidase.
 
   
 0.705
BDP_1668
alpha-L-rhamnosidase domain protein.
 
    0.614
BDP_2152
Alpha-L-fucosidase.
 
     0.614
BDP_2107
Glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
     0.605
BDP_2103
Conserved hypothetical protein.
       0.506
BDP_2106
Glycosyl hydrolase family 43 protein; Belongs to the glycosyl hydrolase 43 family.
       0.478
BDP_2092
Alpha-galactosidase.
 
     0.410
BDP_1706
Solute-binding protein of ABC transporter system for sugars.
 
     0.404
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.