STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZ3LacZ3 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (712 aa)    
Predicted Functional Partners:
BDP_0161
alpha-L-rhamnosidase.
 
 
 
 0.759
BDP_0131
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
 
     0.577
BDP_2094
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
 
     0.439
ptsG
ptsG PTS system, glucose-specific IIABC component.
  
  
 0.412
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
  
  
 0.412
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.