Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_2129Xylan esterase. (273 aa)    
Predicted Functional Partners:
BDP_2127
Cellobiose phosphorylase.
       0.604
BDP_2062
Sialic acid-specific 9-O-acetylesterase.
 
   
 0.582
BDP_0122
Sialic acidspecific 9-O-acetylesterase.
 
   
 0.545
lacZ6
LacZ6 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.455
aroG2-2
aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.
  
   0.444
nmrA
NmrA-like protein.
  
   0.444
BDP_2152
Alpha-L-fucosidase.
 
   
 0.436
BDP_0222
Glycoside hydrolase family 2; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.430
BDP_0161
alpha-L-rhamnosidase.
 
 
 
 0.404
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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