STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2131Transcriptional regulator, LacI family. (316 aa)    
Predicted Functional Partners:
BDP_0563
Transcriptional regulator, LacI family.
  
     0.753
cebR-2
cebR Cellobiose transport system transcriptional regulator.
  
     0.717
BDP_0158
LacI-type transcriptional regulator.
  
     0.715
BDP_0238
LacI-type transcriptional regulator.
  
     0.714
BDP_0953
Transcriptional regulator.
  
     0.709
BDP_0654
Transcriptional regulator, LacI family.
  
     0.707
BDP_0136
LacI-type transcriptional regulator.
  
     0.699
BDP_1054
LacI-type transcriptional regulator.
  
     0.699
BDP_1907
Transcriptional regulator, LacI family.
  
     0.698
BDP_2161
Solute binding protein of ABC transporter system for sugars.
 
  
 0.681
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.