Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
argD-3ArgD Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (444 aa)    
Predicted Functional Partners:
gadB
GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.977
aldH
AldH Aldehyde dehydrogenase (NAD(P)+).
 
 0.956
adh2-2
Adh2 Aldehyde-alcohol dehydrogenase 2.
  
 
 0.952
pta
Phosphate acetyltransferase.
    
 0.820
pfl
Pfl Formate acetyltransferase.
     
 0.810
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
    
 0.808
accC
accC Acetyl-/propionyl-CoA carboxylase alpha chain.
    
 0.808
accD
accD Acetyl-/propionyl-CoA carboxylase beta chain.
   
 
  0.805
BDP_2143
Putative PucR-like transcriptional regulator.
 
   
 0.737
glnA1
glnA1 Glutamine synthetase.
  
  
 0.679
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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