STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glkGlk Glucokinase/Xylose repressor. (303 aa)    
Predicted Functional Partners:
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
 
 
 0.909
ptsG
ptsG PTS system, glucose-specific IIABC component.
  
 
 0.895
BDP_1789
ROK family transcriptional regulator.
  
     0.773
BDP_2227
Transcriptional repressor, ROK family.
  
     0.755
BDP_0425
Transcriptional regulator, ROK family.
  
     0.749
lacZ5-3
LacZ5 Beta-galactosidase.
  
    0.596
BDP_1336
Polyphosphate glucokinase/Transcriptional regulator.
  
   
0.538
gap
Gap Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
   
 0.509
nagA1
NagA1 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.498
BDP_0904
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
   
 0.471
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.