STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZ5-3LacZ5 Beta-galactosidase. (675 aa)    
Predicted Functional Partners:
lacZ5-2
lacZ5 Beta-galactosidase.
  
  
 
0.928
lacZ5
lacZ5 Beta-galactosidase.
  
  
 
0.919
BDP_1908
Beta-galactosidase.
  
  
 
0.919
lacZ1
LacZ1 Beta-galactosidase.
  
 0.913
BDP_0222
Glycoside hydrolase family 2; Belongs to the glycosyl hydrolase 2 family.
  
 0.912
lacZ6
LacZ6 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
 0.912
BDP_1518
Aldose 1-epimerase.
  
 
 0.909
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
  0.902
BDP_2146
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.712
BDP_0134
Alpha-galactosidase.
 
  
 0.710
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.