STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2152Alpha-L-fucosidase. (497 aa)    
Predicted Functional Partners:
BDP_2153
Lipolytic protein G-D-S-L family.
 
     0.904
BDP_2154
Extracellular solute-binding protein, family 1.
 
     0.761
BDP_1668
alpha-L-rhamnosidase domain protein.
 
     0.667
BDP_0122
Sialic acidspecific 9-O-acetylesterase.
 
     0.644
BDP_2062
Sialic acid-specific 9-O-acetylesterase.
 
     0.641
BDP_2104
Conserved hypothetical protein.
 
     0.614
bgl4-2
Bgl4 Beta-glucosidase.
       0.596
BDP_2092
Alpha-galactosidase.
 
     0.559
BDP_1703
Conserved hypothetical protein.
 
     0.552
BDP_2155
Sugar ABC transporter, permease protein.
 
     0.538
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.