STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2152Alpha-L-fucosidase. (497 aa)    
Predicted Functional Partners:
BDP_2153
Lipolytic protein G-D-S-L family.
 
     0.881
BDP_2148
Cellulase.
 
   
 0.756
BDP_2154
Extracellular solute-binding protein, family 1.
 
     0.707
BDP_0128
Mannosidase.
 
   
 0.693
BDP_0236
Beta-xylosidase or endo-arabinase; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.687
BDP_1535
Twin-arginine translocation pathway signal.
     
 0.675
BDP_1668
alpha-L-rhamnosidase domain protein.
 
     0.665
lacZ5
lacZ5 Beta-galactosidase.
  
  
 0.660
BDP_0122
Sialic acidspecific 9-O-acetylesterase.
 
     0.646
BDP_2062
Sialic acid-specific 9-O-acetylesterase.
 
     0.642
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.