STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_2155Sugar ABC transporter, permease protein. (298 aa)    
Predicted Functional Partners:
BDP_2154
Extracellular solute-binding protein, family 1.
 
  0.983
BDP_2156
Permease protein of ABC transporter system for sugars.
 
 
 0.981
BDP_2130
Extracellular solute-binding protein, family 1.
 
  0.967
BDP_0240
ABC-type sugar transporter, sugar-binding component.
 
 0.959
BDP_2110
Extracellular solute-binding protein, family 1.
 
 0.959
BDP_0241
ABC-type sugar transporter, permease component.
 
 
 0.956
BDP_2109
Raffinose transport system permease protein.
 
 
 0.956
BDP_2108
Glycoside hydrolase family 43.
  
  
 
0.916
BDP_0242
ABC-type sugar transporter, permease component.
  
  
 
0.915
BDP_0126
ABC-type sugar transport system, permease component.
 
 
 0.733
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.